It is the film not, the scanner or firmware, that is getting dark, as the scanner exposure is not changing. The exposure is not changing as the weights are sampled from these pixels in yellow:
View attachment 23702
So it is sampling pixel to the right of the film, preventing a change the re-expose. This far out view, is intended out for the replacement lens, and should not be used for the stock lens.
If you frame it like so, the image is mostly sampled, improving your exposure.
View attachment 23701
I do need to move the sampling window further to the right to avoid the large 8mm sprockets.